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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156656968_156658707_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156656968 - 156658707
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATGATTCTATTT
Flanking Amino Acid:
YFAAITALKAGADLSHVFCT
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
76.7
38.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
38
-1.3
3.6
58.2
46.4
Minor BPS
43.7
-0.4
1.8
58.83
39

Associated Gene:

Gene:
NAXD
Ensembl Gene ID:
ENSAPLG00000011789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040352
156620193 - 156665825
45633
ENSAPLT00000012313
156620193 - 156665825
45633