Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156663926_156664969_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

156663926 - 156664969

Intron Length:

1044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TCCTCCAGAAAA

Flanking Amino Acid:

PFAIPVPPGDGFKEISAPTV

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

72.6

38.9

Major BPS

71.2

0.53

70.3

31.9

Major PPT

77.9

0.63

0.8

76.2

32.4

Minor 5ss

31.1

-2.2

2.7

37.6

Minor BPS

49.3

-0

1.9

62.61

43.1

Associated Gene:

Gene:

NAXD

Ensembl Gene ID:

ENSAPLG00000011789

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040352

156620193 - 156665825

45633

ENSAPLT00000012313

156620193 - 156665825

45633