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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15668070_15668762_R

Intron Information:

Intron Rank:
138140
Intron Class:
major
Intron Phase:
Intron Coordinates:
15668070 - 15668762
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCATCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTCATCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.2
0.41
1
59.9
41.3
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
48.9
-0.1
2.2
69
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047579
15663676 - 15669065
5390
ENSAPLT00000017567
15658643 - 15669065
10423