About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156727660_156730407_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156727660 - 156730407
Intron Length:
2748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTGTCTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTACTCTGAACG
Flanking Amino Acid:
SLWIGYSFLMHTAAGDEGGG
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
66.9
36.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
75.5
0.57
0.8
74.4
30.8
Minor 5ss
43.5
-0.7
3.1
57.9
42
Minor BPS
56.3
0.06
1.5
59.65
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025814
156727405 - 156738603
11199
ENSAPLT00000010112
156727405 - 156747473
20069