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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156731233_156733741_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
156731233 - 156733741
Intron Length:
2509

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTGATCAT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTTACCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TCCCCTTTTACC
Flanking Amino Acid:
YPGPKGKDGRCQPGRPGSPG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.4
52.8
43.8
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
67.8
0.4
1
72.1
31.4
Minor 5ss
22.3
-3.2
3.9
37
40.7
Minor BPS
56.5
0.19
1.7
63.7
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010112
156727405 - 156747473
20069