About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156732159_156733536_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
156732159 - 156733536
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CAAGGTTTCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GTGCTCATAACT
Flanking Amino Acid:
IGPKGDRGLTGSPGDPGLQG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
47
-0.1
1.7
48.9
43.4
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
59.2
0.37
1.7
75.1
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025814
156727405 - 156738603
11199