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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156733636_156733741_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
156733636 - 156733741
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTGATCAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGCACTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCTTTTTGCACT
Flanking Amino Acid:
YPGPKGKDGRCRKGEQGVIG
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.4
52.8
43.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
69.5
0.44
1.1
68.9
36.3
Minor 5ss
22.3
-3.2
3.9
37
40.7
Minor BPS
53.2
0.18
1.9
75.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046718
156733529 - 156748261
14733
ENSAPLT00000044042
156733529 - 156744920
11392
ENSAPLT00000025814
156727405 - 156738603
11199