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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156741789_156744861_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
156741789 - 156744861
Intron Length:
3073

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCCAGACGG
5'SS Class:
major
3'SS Sequence:
CGCCTGCAGGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
HGFPGPPGNPGKGMPGLPGK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.3
51.2
44.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
50.9
0.02
1
46.5
35.7
Minor 5ss
16
-3.9
3.3
14.1
27.6
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044042
156733529 - 156744920
11392