About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156743015_156743795_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
156743015 - 156743795
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGGAATTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
CTTTCTTTAAAG
Flanking Amino Acid:
FSFVPVLPALSLKGSPGIDG
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1
55.9
37.9
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
80.7
0.69
1
82
27.2
Minor 5ss
38.6
-1.3
3.7
60.3
45.6
Minor BPS
71.4
0.53
1.5
72.3
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010112
156727405 - 156747473
20069