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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156747479_156748182_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
156747479 - 156748182
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGGAAG
5'SS Class:
major
3'SS Sequence:
GTTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGGTGCCTAATC
Flanking Amino Acid:
PGLNGTRGDPGFTGPRGDRG
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
61.6
44.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82
0.72
0.8
74.4
40.4
Minor 5ss
26.6
-2.7
3
30.4
43.1
Minor BPS
49.4
-0
2.1
63.65
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046718
156733529 - 156748261
14733