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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156753632_156775653_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156753632 - 156775653
Intron Length:
22022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTTT
5'SS Class:
major
3'SS Sequence:
TCACTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATCACCTCTATT
Flanking Amino Acid:
PGISGPKGEMGDTIRGDPGD
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
80.5
34.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
74.5
0.55
0.8
68.6
31.6
Minor 5ss
56.4
0.22
2.5
72.7
39.1
Minor BPS
48.7
-0
1.9
67.34
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028290
156742776 - 156776142
33367