About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156864768_156912777_F

Intron Information:

Intron Rank:
123311
Intron Class:
major
Intron Phase:
Intron Coordinates:
156864768 - 156912777
Intron Length:
48010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039769
156863974 - 156913390
49417
ENSAPLT00000046539
156864711 - 156917453
52743