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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15691696_15694552_R

Intron Information:

Intron Rank:
148295
Intron Class:
major
Intron Phase:
Intron Coordinates:
15691696 - 15694552
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCA
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCATCCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.3
40.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.3
0.77
0.9
81.2
36.5
Minor 5ss
30.9
-2.2
3.3
39.8
45.7
Minor BPS
48.7
-0
2
65.1
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027142
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040618
15691113 - 15696312
5200