Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15694632_15696238_R

Intron Information:

Intron Rank:

148296

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15694632 - 15696238

Intron Length:

1607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

TTAATGGGTGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

ATGTATTCACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.1

37.5

Major BPS

84.4

0.85

34.5

Major PPT

46.9

-0.1

1.8

50.1

47.7

Minor 5ss

23.1

-3.1

3.2

27.7

44.2

Minor BPS

47.2

-0.1

1.9

67.36

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040618

15691113 - 15696312

5200