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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156972411_156977257_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
156972411 - 156977257
Intron Length:
4847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTCAGATTT
5'SS Class:
major
3'SS Sequence:
TGTTTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTTTCTCTAATC
Flanking Amino Acid:
IICAPQRKDICAKGDVGFPG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
74.5
36.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
68.5
0.42
1
64
40.7
Minor 5ss
41.7
-0.9
3.2
61.9
42.5
Minor BPS
64.9
0.45
1.7
74.53
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024412
156972347 - 156977801
5455