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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156974209_156974248_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
156974209 - 156974248
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTTCTTG
5'SS Class:
weak_major
3'SS Sequence:
TGCAGTGCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TGTTCTTGAGTT
Flanking Amino Acid:
GSPGMAGFPGNYCQTYRFIC
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.1
54
39.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
48.4
-0
1.2
45
40.5
Minor 5ss
49.9
-0
2.6
63.9
42.2
Minor BPS
59
0.36
1.7
77.64
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025114
156967036 - 156997555
30520