Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156977579_156991414_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

156977579 - 156991414

Intron Length:

13836

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TTG|GCATCATGT

5'SS Class:

weak_major

3'SS Sequence:

CTTAACATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TTTGACTTAACA

Flanking Amino Acid:

SAKAVLHRQLGTAGSCLRKF

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.2

0.17

1.3

46.8

Major BPS

0.52

1.1

77.7

35.3

Major PPT

75.2

0.57

0.9

70.6

39.4

Minor 5ss

41.1

-1

4.1

44.6

Minor BPS

74.9

0.78

1.6

84.46

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025114

156967036 - 156997555

30520