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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156991593_156994402_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156991593 - 156994402
Intron Length:
2810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTGGTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTATCTCATTT
Flanking Amino Acid:
TGENIRPFISRCAVCEAPAM
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.7
0.62
0.9
70
41.4
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
49
0.01
1.8
69.44
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025114
156967036 - 156997555
30520