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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156994518_156995497_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156994518 - 156995497
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGCG
5'SS Class:
major
3'SS Sequence:
TTCACTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
SLWIGYSFVMHTSAGAEGSG
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
42.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.8
69
36.9
Minor 5ss
36.8
-1.5
3.3
44.8
44.2
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025114
156967036 - 156997555
30520