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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157150295_157151323_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
157150295 - 157151323
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGAAAGC
5'SS Class:
weak_major
3'SS Sequence:
GGAAAGAACAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
TTTTCCTTTAGG
Flanking Amino Acid:
DGTLANCDKARATPPPSNSN
Intron Amino Acid Position:
1140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.3
54.1
43.5
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
42.6
-0.4
1.1
26.8
34.6
Minor 5ss
27.2
-2.6
3
35.1
40.9
Minor BPS
65.3
0.34
2
75.67
42.1

Associated Gene:

Gene:
IRS2
Ensembl Gene ID:
ENSAPLG00000021237
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024452
157146819 - 157151390
4572