About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15722778_15723773_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15722778 - 15723773
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CCATATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTCCATATTT
Flanking Amino Acid:
ETLDSSAIEVRVHCQLMKLF
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.4
0.66
0.9
76.4
37.1
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
62.3
0.46
1.9
83.51
37.5

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039364
15722616 - 15766670
44055
ENSAPLT00000022909
15722616 - 15766670
44055
ENSAPLT00000003805
15722616 - 15766670
44055