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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15723983_15726785_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15723983 - 15726785
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCTTTTTTGATT
Flanking Amino Acid:
LVRNTNQNDQFDFSFVDVYR
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
64.3
0.53
1.2
73.17
39

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039364
15722616 - 15766670
44055
ENSAPLT00000022909
15722616 - 15766670
44055
ENSAPLT00000003805
15722616 - 15766670
44055