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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157243499_157243671_F

Intron Information:

Intron Rank:
127329
Intron Class:
major
Intron Phase:
Intron Coordinates:
157243499 - 157243671
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
TTCTCTTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
73.3
37.4
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
83.4
0.75
0.8
79.3
32.7
Minor 5ss
34.6
-1.7
2.8
39.6
39.8
Minor BPS
57.8
0.24
1.8
71.8
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044175
157242340 - 157243888
1549