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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157267664_157271399_R

Intron Information:

Intron Rank:
137687
Intron Class:
major
Intron Phase:
Intron Coordinates:
157267664 - 157271399
Intron Length:
3736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
79.3
0.9
1.3
87.1
29.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024408
157266869 - 157272167
5299
ENSAPLT00000026145
157266869 - 157272167
5299