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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15726992_15735072_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15726992 - 15735072
Intron Length:
8081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATGCCTTTATT
Flanking Amino Acid:
QQKKCGLKNEEDEEEWKVIK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.1
0.59
1
72.7
42.1
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
58.5
0.35
1.8
72.45
44.6

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003805
15722616 - 15766670
44055
ENSAPLT00000039364
15722616 - 15766670
44055
ENSAPLT00000022909
15722616 - 15766670
44055