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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157281854_157281936_F

Intron Information:

Intron Rank:
134672
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
157281854 - 157281936
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATCAGAC
5'SS Class:
weak_major
3'SS Sequence:
GATCTTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTCATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.2
53
38.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
64.5
0.33
1.1
60.7
44.5
Minor 5ss
41.9
-0.9
3.3
49.9
46.8
Minor BPS
57
0.3
1.8
73.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037011
157281571 - 157296369
14799