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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157281997_157292961_F

Intron Information:

Intron Rank:
134673
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
157281997 - 157292961
Intron Length:
10965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TGCCAAAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CTTGCCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
75.5
40.6
Major BPS
61.1
0.28
1
67
29.8
Major PPT
55.5
0.12
1
47.3
38.3
Minor 5ss
41.5
-0.9
3.2
56
42.5
Minor BPS
49.9
-0
2.1
67.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037011
157281571 - 157296369
14799