About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157312633_157320528_R

Intron Information:

Intron Rank:
138278
Intron Class:
major
Intron Phase:
Intron Coordinates:
157312633 - 157320528
Intron Length:
7896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
ATTGCTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
68.5
42.2
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
47.6
-0.2
2.5
65.2
40
Minor BPS
46.7
-0.1
1.9
68.98
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027848
157312266 - 157321265
9000