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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157330666_157332670_F

Intron Information:

Intron Rank:
137622
Intron Class:
major
Intron Phase:
Intron Coordinates:
157330666 - 157332670
Intron Length:
2005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
ATGTCTTTGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
63
0.49
1.6
76.71
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034737
157330171 - 157336541
6371