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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157334987_157336117_F

Intron Information:

Intron Rank:
137621
Intron Class:
major
Intron Phase:
Intron Coordinates:
157334987 - 157336117
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TACCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TATTCTCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
83.3
0.75
0.8
80.7
30.9
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
59.2
0.37
1.9
81.78
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042059
157329263 - 157336541
7279
ENSAPLT00000034737
157330171 - 157336541
6371
ENSAPLT00000032415
157329263 - 157336541
7279