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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157340177_157350182_R

Intron Information:

Intron Rank:
135037
Intron Class:
major
Intron Phase:
Intron Coordinates:
157340177 - 157350182
Intron Length:
10006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.3
0.68
0.8
73.1
36.3
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
58.9
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019386
157339881 - 157350927
11047