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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157355645_157359955_F

Intron Information:

Intron Rank:
134453
Intron Class:
major
Intron Phase:
Intron Coordinates:
157355645 - 157359955
Intron Length:
4311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
CATGTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.1
0.54
1
69.3
40.3
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
63.7
0.43
1.4
67.28
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036203
157352190 - 157360305
8116