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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157355645_157360645_F

Intron Information:

Intron Rank:
134451
Intron Class:
major
Intron Phase:
Intron Coordinates:
157355645 - 157360645
Intron Length:
5001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTACTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.2
0.7
0.8
74.8
34.4
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
54.9
0.13
1.9
68.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023976
157355435 - 157361138
5704