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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15737733_15740327_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15737733 - 15740327
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTTCTTAATG
Flanking Amino Acid:
PVTSALHIIVGFKTFLSHHY
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.4
0.64
0.9
75.1
33.5
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
76.3
0.69
1.3
74.4
38.6

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039364
15722616 - 15766670
44055