Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15740403_15748730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15740403 - 15748730

Intron Length:

8328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

CTTCATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTGGTCTTCATT

Flanking Amino Acid:

CNIRIGIIPAGSTDCVCYST

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

73.4

37.3

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

86.5

0.82

0.7

84.1

30.4

Minor 5ss

-1.9

2.9

37.5

41.1

Minor BPS

55.5

0.25

1.9

74.52

43.3

Associated Gene:

Gene:

CERK

Ensembl Gene ID:

ENSAPLG00000003665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022909

15722616 - 15766670

44055

ENSAPLT00000003805

15722616 - 15766670

44055

ENSAPLT00000039364

15722616 - 15766670

44055