About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157431357_157437711_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
157431357 - 157437711
Intron Length:
6355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AGATTATAAATT
Flanking Amino Acid:
TAENGNSVSNGLAEENEYSR
Intron Amino Acid Position:
1719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.9
36.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.2
0.59
0.9
74.1
36.7
Minor 5ss
42.4
-0.8
3.5
61.3
44.6
Minor BPS
48.1
-0
1.9
64.81
39.7

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007924
157415275 - 157673298
258024
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608