About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157437871_157457944_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
157437871 - 157457944
Intron Length:
20074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
TTCTCTGTGACA
Flanking Amino Acid:
AAGRKIREPEGAETNLNLRS
Intron Amino Acid Position:
1666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
53.3
0.08
1.1
59
36
Major PPT
74.9
0.56
1
71.7
38.2
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
58.5
0.26
2
73.69
38.7

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024