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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157498209_157498463_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157498209 - 157498463
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
GPTTVAIQLRKSLTDIIGKL
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
69.7
36.7
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
27.9
-2.5
2.8
24.7
36.8
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024