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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157505803_157517921_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157505803 - 157517921
Intron Length:
12119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTA
Flanking Amino Acid:
TFTIMHYAGRVTYEIAGAVE
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.8
77.9
34.9
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
49.8
-0
1.5
58.92
34.9

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024