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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15753542_15754117_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15753542 - 15754117
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CATTTCTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTCTTCATA
Flanking Amino Acid:
SLASISTDVVITEHANHAKD
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
0.9
78.6
29.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
0.8
72.5
31.9
Minor 5ss
33.8
-1.8
2.9
44
38.6
Minor BPS
58.5
0.26
1.7
67.46
39.7

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039364
15722616 - 15766670
44055
ENSAPLT00000022909
15722616 - 15766670
44055
ENSAPLT00000003805
15722616 - 15766670
44055