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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157540365_157541131_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
157540365 - 157541131
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
CTTTTCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTCTTTAAAT
Flanking Amino Acid:
LVSDLQLLEQVAGMLQVSPD
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
67.1
44.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.6
0.82
0.8
84.4
30.5
Minor 5ss
27.5
-2.6
2.9
32.4
42.2
Minor BPS
78.3
0.97
1.3
88.96
35.8

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024