About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15754244_15756527_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15754244 - 15756527
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TACCTTACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTTTACCT
Flanking Amino Acid:
QALKELLEMQKCRPKRLLVY
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.3
0.59
0.9
70.3
34.6
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
CERK
Ensembl Gene ID:
ENSAPLG00000003665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039364
15722616 - 15766670
44055
ENSAPLT00000022909
15722616 - 15766670
44055
ENSAPLT00000003805
15722616 - 15766670
44055