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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157610325_157626029_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157610325 - 157626029
Intron Length:
15705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GCTTCTGCCATT
Flanking Amino Acid:
PLHLAAKYGQTHLVKLLLMH
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
41
-0.6
2.4
59.97
44.4

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024