About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157639811_157671085_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157639811 - 157671085
Intron Length:
31275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTTACATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTTTTTCACT
Flanking Amino Acid:
NPDIVLLLLLAGANVLLQDV
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.6
0.49
0.9
66.8
33.4
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
60.6
0.41
1.7
77.17
40

Associated Gene:

Gene:
MYO16
Ensembl Gene ID:
ENSAPLG00000007605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042744
157415275 - 157720289
305015
ENSAPLT00000040113
157415936 - 157675543
259608
ENSAPLT00000007924
157415275 - 157673298
258024