About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157794429_157798693_F

Intron Information:

Intron Rank:
134637
Intron Class:
major
Intron Phase:
Intron Coordinates:
157794429 - 157798693
Intron Length:
4265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
GTCTGACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TATGTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
70.9
0.47
0.9
62.8
38.7
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
52
0.14
1.8
73.44
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034351
157794190 - 157800892
6703