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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157856102_157856237_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
157856102 - 157856237
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACTCT
5'SS Class:
weak_major
3'SS Sequence:
CATTGTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
CAATCCTGAATC
Flanking Amino Acid:
HQMQYYITFEVLECSWDELW
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
38.5
Major BPS
62.4
0.31
1
64
32.1
Major PPT
71.9
0.49
1
61.9
44.2
Minor 5ss
56.8
0.23
2.5
74.3
42
Minor BPS
63.1
0.39
1.5
65.56
39.8

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777