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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157858892_157860090_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157858892 - 157860090
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGTCG
5'SS Class:
major
3'SS Sequence:
GTTCATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTCTGTTAAAT
Flanking Amino Acid:
DYHVDGPIATVFTRECMSHY
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
57.2
42.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.7
0.65
0.8
73.4
36.7
Minor 5ss
37.6
-1.4
3.2
48.9
46.8
Minor BPS
51.8
0.13
2.1
74.05
42.7

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777