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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157860710_157862546_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
157860710 - 157862546
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCATAACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATAACT
Flanking Amino Acid:
DFIRHLMDLLKPELARPATT
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.9
29.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.1
0.52
1
62.8
42.8
Minor 5ss
33.8
-1.8
3.5
47.5
42.5
Minor BPS
73.5
0.82
1.6
89.66
34

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777