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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157871190_157875349_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157871190 - 157875349
Intron Length:
4160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
CTAATTTGATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTCCTTGATC
Flanking Amino Acid:
YRLLSVLHSQLQLEDDQGVN
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
66.7
0.38
1.1
66.3
43.7
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
80.6
0.95
1
82.61
30.8

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777