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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157875419_157878808_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157875419 - 157878808
Intron Length:
3390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATTTCCTAATG
Flanking Amino Acid:
LDRAFGLVGQSFCAALHQEL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
62.6
0.26
1.7
68.95
38.6

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777